World Food Day – let’s make it every day

Wheat rust on a wheat stem. Image: Evans Lagudah and Zakkie Pretorius.

Wheat rust on a wheat stem. Image: Evans Lagudah and Zakkie Pretorius.

It’s World Food Day, and this year’s focus is on the role smallholder farmers play in feeding the world.

Food production is at record levels, yet 842 million people are estimated to be suffering from chronic hunger and under-nourishment. Many of these are themselves small family farmers.

We’re trying to do our bit to help subsistence farmers grow more productive crops, combat plant diseases, farm seafood sustainably, develop climate change adaption strategies and grow coffee more sustainably.

One plant we’re working on is cow peas (one of the staple crops in parts of Africa). We recently got a Gates Foundation grant to further our research on improving their productivity.

On a broader scale, we’ve also cracked a problem with a globally-significant crop: wheat. With colleagues from the Sydney and Adelaide Universities, we’ve identified a gene that confers resistance to wheat rust – probably the biggest enemy of wheat crop yields worldwide.

Seafood is a major source of protein in both the developed and developing worlds, and we’ve found a way to farm the most delectable kind of all – prawns – more sustainably. Our Novacq™ fishless prawn food is now licenced for use in several South-East Asian countries. It makes use of the marine microbes at the base of the food chain to produce a prawn food that has the added benefit of increasing their growth rate by around 30 per cent.

Climate change is a pressing problem for us all, but some of the people most at risk are farming communities in countries in southern and south-eastern Asia. We’re collaborating with farmers in parts of Cambodia, Laos, Bangladesh and India to identify, select and test climate change adaptation options that are both viable and suitable for local communities. One of the things we’re aiming to do is develop and test new crop and water management practices for rice-based cropping systems that will outperform existing farming practices and can accommodate future climate variability and climate change.

There are about 400 000 PNG households involved in coffee production

There are about 400 000 PNG households involved in coffee production

After all that work, we might be tempted to celebrate with a good cup of coffee. Maybe a PNG blend. There are more than 400 000 households involved in coffee production in PNG, and it’s that country’s most important export cash crop.

With our Australian and international partners, we’re developing new ways for farmers and researchers to learn from each other and identify ways to improve the sustainability of PNG’s coffee industry. We hope to identify the points in the coffee-food farming system that can be targeted for the best possible result in retaining and reusing scarce nutrient resources.


Plants absorb more CO2 than we thought, but …

Plants doing the photosynthesis thing

A new study shows plants may absorb more carbon than we thought. Jason Samfield/Flickr, CC BY-NC-SA

By Pep Canadell, CSIRO

Through burning fossil fuels, humans are rapidly driving up levels of carbon dioxide in the atmosphere, which in turn is raising global temperatures.

But not all the CO2 released from burning coal, oil and gas stays in the air. Currently, about 25% of the carbon emissions produced by human activity are absorbed by plants, and another similar amount ends up in the ocean.

To know how much more fossils fuels we can burn while avoiding dangerous levels of climate change, we need to know how these “carbon sinks” might change in the future. A new study led by Dr. Sun and colleagues published today in PNAS shows the land could take up slightly more carbon than we thought.

But it doesn’t change in any significant way how quickly we must decrease carbon emissions to avoid dangerous climate change.

Models overestimate CO2

The new study estimates that over the past 110 years some climate models over-predicted the amount of CO2 that remains in the atmosphere, by about 16%.

Models are not designed to tell us what the atmosphere is doing: that’s what observations are for, and they tell us that CO2 concentrations in the atmosphere are currently over 396 parts per million, or about 118 parts per million over pre-industrial times. These atmospheric observations are in fact the most accurate measurements of the carbon cycle.

But models, which are used to understand the causes of change and explore the future, often don’t match perfectly the observations. In this new study, the authors may have come up with a reason that explains why some models overestimate CO2 in the atmosphere.

Looking to the leaves

Plants absorb carbon dioxide from the air, combine it with water and light, and make carbohydrates — the process known as photosynthesis.

It is well established that as CO2 in the atmosphere increases, the rate of photosynthesis increases. This is known as the CO2 fertilisation effect.

But the new study shows that models may not have quite right the way they simulate photosynthesis. The reasons comes down to how CO2 moves around inside a plant’s leaf.

Models use the CO2 concentration inside a plant’s leaf cells, in the so called sub-stomatal cavity, to drive the sensitivity of photosynthesis to increasing amounts of CO2. But this isn’t quite correct.

The new study shows that CO2 concentrations are actually lower inside a plant’s chloroplasts — the tiny chambers of a plant cell where photosynthesis actually happens. This is because the CO2 has to go through an extra series of membranes to get into the chloroplasts.

This means that photosynthesis takes place at lower CO2 than models assume. But counterintuitively, because photosynthesis is more responsive to increasing levels of CO2 at lower concentrations, plants are removing more CO2 in response to increasing emissions than models show.

Photosynthesis increases as CO2 concentrations increase but only up until a point. At some point more CO2 has no effect on photosynthesis, which stays the same. It becomes saturated.

But if concentrations inside a leaf are lower, this saturation point is delayed, and growth in photosynthesis is higher, which means more CO2 is absorbed by the plant.

The new study shows that when accounting for the issue of CO2 diffusivity in the leaf, the 16% difference between modelled CO2 in the atmosphere and the real observations disappear.

It is a great, neat piece of science, which connects the intricacies of leaf level structure to the functioning of the Earth system. We will need to reexamen they way we model photosynthesis in climate models and whether a better way exists in light of the new findings.

Does this change how much CO2 the land absorbs?

This study suggests that some climate models models under-simulate how much carbon is stored by plants, and in consequence over-simulate how much carbon goes into the atmosphere. The land sink might be a little bigger — although we don’t know yet how much bigger.

If the land sink does a better job, it means that for a given climate stabilisation, we would have to do a little bit less carbon mitigation.

But photosynthesis is a long, long way before a true carbon sink is created, one that actually stores carbon for a long time.

About 50% of all CO2 taken in by photosynthesis goes back to the atmosphere soon after through plant respiration.

Of what remains, more than 90% also returns back to the atmosphere through microbial decomposition in the soils and disturbances such as fire over the following months to years — what stays, is the land sink.

Good news, but not time for complacency

The study is a rare and welcome piece of possible good news, but it needs to be placed in context.

The land sink has very large uncertainties, they have been well quantified, and the reasons are multiple.

Some models suggest that the land will continue to absorb more carbon all throughout this century, some predict it will absorb more carbon up to a point, and some predict that the land will start releasing carbon — becoming a source, not a sink.

The reasons are multiple and include limited information on how the thawing of permafrost will effect large carbon reservoirs, how the lack of nutrients could limit the further expansion of the land sink, and how fire regimes might change under a warmer world.

These uncertainties put together are many times bigger than the possible effect of the leaf CO2 diffusion. The bottom line is that humans continue to be in full control of what’s happening to the climate system over the coming centuries, and what we do with greenhouse emissions will largely determine its trajectory.

The Conversation

Pep Canadell receives funding from the Australian Climate Change Science Program.

This article was originally published on The Conversation.
Read the original article.


Voting in swarms is all the buzz

By Emily Lehmann

There’s been a buzz around town about our bee research this year, and for good reason.

In a world first, we’ve been microchipping thousands of bees with tiny sensors in Australia and South America to monitor their activity and the way they interact with the environment.

Bee with backpack/

A bee. With a backpack. What of it?

We’ve called this ‘swarm sensing’ and it could help gather the information we need to find a solution to the mysterious and devastating decline of bees around the world.

While we’ve been buzzily strapping these tiny sensors on bees in the Amazon in collaboration with Vale Institute of Technology, there has been a swarm of attention around our work back home.

Swarm sensing hit the polls earlier this week, as one of five finalists in The Australian Innovation Challenge’s category for Environment, Agriculture and Food. And, it’s up to the people – that means you – to decide which one of these innovations deserves to win $5000.

Bee hive

These guys are an important link in the global food chain – and they need our help!

Now, if cute honey bees wearing mini, colour-coordinated ‘backpacks’, isn’t enough to sway your vote, then we’ve gathered a few hot facts about why this work is so critical to get you over the line:

  1. Around one third of the food we eat relies on bees for pollination.
  1. By aiding agriculture, honey bees earn an estimated $4-6 billion for Australia every year.
  1. Wild honey bee populations are dropping drastically or vanishing all together around the world. There are two major problems causing their decline: the varroa mite and the little understood Colony Collapse Disorder
  1. While there is a real risk, bees in Australia have not been affected by the Varroa mite or Colony Collapse Disorder.
  1. Parasites, pollution and pesticides are potential factors in the decline of honey bee populations.

To vote CSIRO, visit The Australian Innovation Challenge article and select ‘swarm sensing’ in the poll at the bottom of the page. Go on, #voteCSIRO and do it for the bees!


Opening the Gates to African food security

Cowpea pod in flower

Cowpeas are a staple food crop in sub-Saharan Africa

It’s a hard life being a small farmer in sub-Saharan Africa. About 200 million people in the region are poor and undernourished. Most of them are smallholder farmers in rural areas, who rely on agriculture as their main source of food and income.

Part of the reason for their level of hardship is that the major staple crops, sorghum and cowpeas (which provide not just food but fuel and fodder for livestock) have low yields. Poor soil, low-quality seed, drought and disease all play their part.

Obviously, if these farmers could get greater productivity from their crops, they could have a secure supply of food, and possibly even be able to sell the excess and bring in some extra money. But conventional genetic improvement to increase yield is a slow process, and these farmers are hungry now.

So: how to make improved yields happen?

Cowpea pod

A cowpea pod, with seeds

The Bill and Melinda Gates Foundation has just awarded us a $14.5 million grant to work on it. The five year project, in partnership with other world leading research teams from Switzerland, USA, Germany and Mexico, will develop tools to generate self-reproducing hybrid cowpea and sorghum crops.

What we’re planning to do is to develop high-yielding sorghum and cowpea crops that have seeds the farmers can save and grow, and which don’t decrease in quality or yield. And that’s going to mean making a very fundamental change to the way they’re bred – changing from sexual reproduction to asexual.

Hybrid crops can produce yield increases of 30 per cent or more, because of what’s known as hybrid vigour – basically that some crosses between two strains of crop will combine the favourable traits of both parents and be more successful than either. Diagram of planned crop improvement

Hybrid vigour is the same mechanism which produces the loveable labradoodle. A labradoodle puppy inherits the favourable traits from its purebred Labrador and poodle parents. However, two labradoodles won’t produce labradoodle puppies (they’ll be more Labrador-ish, or more poodle-ish). In just the same way, the seed from hybrid crops will not express the favourable traits. The puppy’s increased adorableness is of course a matter of personal opinion but it is a furry demonstration of hybrid vigour.

Unfortunately, current technologies to produce hybrid seed (and labradoodles) are expensive, and farmers need to buy new seed every year as the favourable traits only last one generation.

If we can develop self-reproducing hybrid cowpea and sorghum crops the farmers would then be able to self-harvest high-quality seed, giving them a more secure food supply and possibly even increased income from selling excess seed.

It’s a big challenge. As project leader Dr Anna Koltunow explains ‘It’s not going to be easy, otherwise it would have been done already. The idea of changing the plants’ reproductive process to an asexual one is a complex undertaking’.

The first stage of the project will involve developing the techniques that will allow cowpea and sorghum plants to reproduce asexually. This is lab-based work. If this stage is successful, African breeders and institutes will join the project for the subsequent phases.


What’s in your porcini packet? You may find a new species … or three

By Nai Tran-Dinh, CSIRO and David Midgley, CSIRO

Mycologists – scientists who study fungi – estimate there are up to five million species of fungi on Earth. Of these, only about 2%, or 100,000 species, have been formally described. So where are the other 98% of fungi hiding?

At least three, it seems, were hiding in a supermarket packet of dried porcini mushrooms from China. Mycologists Bryn Dentinger and Laura Suz from the Royal Botanic Gardens in Kew, UK, used DNA sequencing to identify three new species in a packet of dried porcini mushrooms purchased from a supermarket, and report their findings in the journal PeerJ today.

The internal transcribed spacer (ITS) is a DNA region commonly used to identify fungi. (In fact, it’s been called the “universal DNA barcode marker for fungi”.) In their PeerJ paper, Dentinger and Suz compared previously published ITS sequences for porcini and discovered significant differences in three of their packet of dried mushrooms, enough to mark them as new species.

Their work also highlighted the use of modern DNA sequencing technologies for identifying species in food, and for monitoring foods for quality and adherence to international regulations, such as the Convention on Biological Diversity.

Fungi really are fascinating

Like an apple, a mushroom is the fruit of the fungus. It’s not the apple tree.

Porcini

Typical porcini (Boletus edulis var. clavipes) in its natural habitat. This is not one of the newly discovered species (which are only known from the dried remains in the packet).
Bryn Dentinger

Most of the fungus grows below the ground, in a vast network of root-like tubes called hyphae. How vast, you might ask? Well, in a case known as the “humongous fungus”, a single clone (individual) of the honey mushroom (Armillaria ostoyae) has been shown to cover more than 900 hectares in Malheur National Forest in Oregon, USA. Estimates place the age of this gigantic fungal network at more than 2,000 years.

In Australia, some of our fungi are a little more modest in size, though perhaps bigger than you might guess. Nicole Sawyer and John Cairney at the University of Western Sydney have estimated the size of individuals of the Australian Elegant Blue Webcap (Cortinarius rotundisporus) at more than 30m in diameter – about the size of tennis court.

Despite the impressive size of some species, new species of fungi don’t get the same recognition as a new species of mammal, bird or reptile. But discoveries of novel species are the new norm in modern mycology – a change being driven by advances in our ability to sequence DNA.

It’s very important to better understand fungi, as they underpin the terrestrial biology of Earth. They associate with the vast majority of plants in a symbiosis called mycorrhiza.

Living both within plant roots, and out in the soil, they gather nutrients for the plant, and protect it against diseases and water stress, enhancing plant growth in exchange for sugars the plant produces via photosynthesis.

Without their fungal assistants, plants as we know them would not exist. Other fungi are vital decomposers and return nutrients stored in organic matter to the soil. While the most fungi are beneficial, some fungi are devastating plant pathogens, while a small number of fungi can cause disease in humans such as ringworm, trichosporonosis or aspergillosis.

Close human relationships

Humans have also recruited an array of fungi to their cause. Products produced by fungi are used in medicine – many antibiotics come from fungi – and the production of a range of food products including soy sauce, blue cheese, bread, beer and wine.

New porcini dried

Some of the new porcini species reported in PeerJ today.
Bryn Dentinger

Numerous new fungi related to Malassezia (a yeast that causes dandruff in humans) have been found in marine subsurface sediments in the South China Sea by Chinese researchers from Zhongshan (Sun Yatsen) University, while scientists from the Woods Hole Oceanographic Institution in the US found the same Malassezia-like species from the Peru Trench in the Pacific Ocean.

The work in the Peru Trench used environmental RNA sequencing to guarantee that sequences observed were from environmental samples, and not contaminants from human skin.

Recent advances in modern DNA sequencing technology routinely yield millions of DNA fragments (reads) that can be quickly and accurately identified using classification tools. One such tool is the recently released Warcup ITS fungal identification set developed by CSIRO scientists in collaboration with the Ribosomal Database Project (RDP) and partners from the Western Illinois University and the Los Alamos National Laboratory in the US.

The Warcup ITS dataset allows identification, to species level, of thousands of ITS sequences within minutes.

The use of modern DNA technologies and classification tools may allow development of bioactive compounds for medicine, enhanced agricultural productivity, environmental damage repair, industrial applications such as biofuels and enzymes, along with food identification and potentially new food sources … sometimes in places you’d least expect.

The Conversation

The authors do not work for, consult to, own shares in or receive funding from any company or organisation that would benefit from this article. They also have no relevant affiliations.

This article was originally published on The Conversation.
Read the original article.


Less is more with the Water Use Efficiency Initiative

Wheat harvest in SA

A fine wheat crop. Image by John Coppi

Australia is not what you’d call over-burdened with water, and yet we grow vast amounts of wheat and other grains. To continue to do so, we need to use the water we have as efficiently as possible. To do more with less.

Together with the Grains Research and Development Corporation, we started a multi-pronged project to increase the water use efficiency of grain production in Australia. And it worked so well that two of our scientists, James Hunt and John Kirkegaard, have just shared a Eureka Prize for it.

Their research has shown that it’s possible to increase the long term average winter crop yield, without increasing input costs. This would lift the average Australian wheat yield by around 25 per cent across all regions. They have also shown an increase in the long term average yields of winter grain crops, including barley and canola.

To make sure they covered all types of climate and soil conditions, they worked with 16 regional grower groups and research institutions across Australia, from the WA Sandplain to Tasmania.

They studied the many factors that influence water use efficiency and looked into the kinds of management practices that lead to more efficient use of water.

Instead of looking at a single crop or a single paddock, the research focussed on the capacity of the whole farm, and then assessed the farm’s potential for production and profitability, as well as the risks that might be associated with a change in the water use regime.

Some of the results returned big numbers. Improved summer fallow management, including weed management and stubble retention can lead to a 60 per cent increase in grain yield. The use of a legume crop after two consecutive grain crops can lead to increases in a range between 16 and 83 per cent.

The results also revealed that matching nitrogen supply to the soil type produce yield increases of up to 91 per cent.

In a world that needs to be fed, these are important findings. If we can do more to work to our conditions, it’s an all-round win.

So big congratulations to James and John, for making less more.


Can we feed the world and save our species?

Australia’s Biodiversity series – Part 7: Farming, pastoralism and forestry

Australian agriculture provides food and fibre for millions of people in Australia and around the world, but it can come at a cost to our environment and biodiversity.

There is a range of intensities of primary production in Australia today. Hunting and gathering and use of fire to manipulate the abundance of native species is at the lowest end of the spectrum, then livestock grazing of native pastures, right through to complete replacement of native species for intensive cropping and forestry plantation (the latter requiring inputs in the way of fertilisers, machinery, chemicals etc.). The more intensive the production method, the more food and fibre can be produced per unit area, but with greater impact on biodiversity. Less intensive production methods provide opportunities for native species to coexist with production.

Better management of our agricultural landscapes can enhance biodiversity, and in turn, enhanced biodiversity can benefit agriculture through services like pollination and recycling nutrients in soils.

In the seventh video of our Australia’s Biodiversity series, Dr Sue McIntyre talks about the different intensities of agriculture in operation across Australia and what research is telling us about better managing practices to continue supporting biodiversity in those landscapes:

To find out more about managing agricultural landscapes for biodiversity, you might like to read the corresponding chapter of CSIRO’s Biodiversity Book.

Last week’s video looked at Indigenous perspectives on Australia’s biodiversity and its management. You can review it and the other videos in the series on our YouTube channel.


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